Дана стаття присвячена тематичній збірці інформації про існуюче науково-технічне програмне забезпечення дистрибутиву Gentoo.
astronomy
celestia - OpenGL 3D space simulator License: GPL-2
maestro - Maestro is a public release software package that NASA scientists use to operate the Spirit and Opportunity Rovers. License: maestro
maestro-data - Maestro data updates for the Spirit and Opportunity Rovers. License: maestro
orsa - Orbit Reconstruction, Simulation and Analysis License: GPL-2
predict - Satellite tracking and orbital prediction. License: GPL-2
pyephem - PyEphem provides scientific-grade astronomical computations for the python programming language. License: GPL-2
setiathome - Search for Extraterrestrial Intelligence SETI@home License: GPL-2
stellarium - Stellarium renders 3D photo-realistic skies in real time. License: GPL-2
wcstools - Astronomy Library to handle World Coordinate System for FITS images License: LGPL-2 GPL-2 LGPL-2
xephem - XEphem is the X Windows Ephemeris, and provides a scientific-grade solar system model, star charts, sky views, plus a whole lot more. License: as-is
biology
aaindex - Amino acid indices and similarity matrices License: public-domain
amap - Protein multiple-alignment-based sequence annealing License: public-domain
ariadne - Protein sequences and profiles comparison License: as-is
bioperl - Perl tools for bioinformatics - Core modules License: GPL-2 Artistic GPL-2
bioperl-run - Perl tools for bioinformatics - Analysis run modules License: GPL-2 Artistic GPL-2
biopython - Biopython - Python modules for computational molecular biology License: as-is
bioruby - An integrated environment for bioinformatics using the Ruby language License: GPL-2
clustalw - General purpose multiple alignment program for DNA and proteins License: clustalw
clustalw-mpi - A parallel (MPI) implemention of the Clustal-W general purpose multiple alignment algorithm License: public-domain
clustalx - Graphical interface for the ClustalW multiple alignment program License: public-domain
cutg - Codon usage tables calculated from GenBank License: public-domain
dialign-t - An improved algorithm for segment-based multiple sequence alignment License: LGPL-2.1
elph - Estimated Locations of Pattern Hits - Motif finder program License: Artistic
embassy - A meta-package for installing all EMBASSY packages (EMBOSS add-ons) License: freedist GPL-2 freedist
embassy-domainatrix - Protein domain analysis add-on package for EMBOSS License: GPL-2 LGPL-2 GPL-2
embassy-domalign - Protein domain alignment add-on package for EMBOSS License: GPL-2 LGPL-2 GPL-2
embassy-domsearch - Protein domain search add-on package for EMBOSS License: GPL-2 LGPL-2 GPL-2
embassy-emnu - EMBOSS Menu is Not UNIX - Simple menu of EMBOSS applications License: GPL-2 LGPL-2 GPL-2
embassy-esim4 - EMBOSS integrated version of sim4 - Alignment of cDNA and genomic DNA License: GPL-2 LGPL-2 GPL-2
embassy-hmmer - EMBOSS integrated version of HMMER - Biological sequence analysis with profile HMMs License: GPL-2 LGPL-2 GPL-2
embassy-memenew - EMBOSS integrated version of MEME - Multiple Em for Motif Elicitation License: GPL-2 LGPL-2 GPL-2
embassy-mse - EMBOSS integrated version of MSE - Multiple Sequence Screen Editor License: GPL-2 LGPL-2 GPL-2
embassy-phylipnew - EMBOSS integrated version of the PHYLogeny Inference Package License: freedist
embassy-signature - Protein signature add-on package for EMBOSS License: GPL-2 LGPL-2 GPL-2
embassy-structure - Protein structure add-on package for EMBOSS License: GPL-2 LGPL-2 GPL-2
embassy-topo - EMBOSS integrated version of TOPO - Transmembrane protein display License: GPL-2 LGPL-2 GPL-2
emboss - The European Molecular Biology Open Software Suite - A sequence analysis package License: LGPL-2 GPL-2 LGPL-2
foldingathome - Help simulate protein folding at home License: as-is
generic-genome-browser - The generic genome browser provides a display of genomic annotations on interactive web pages License: Artistic
gibbs - A Gibbs sampling algorithm for local alignment of subtle sequence signals in multiple protein sequences. License: public-domain
hmmer - Sequence analysis using profile hidden Markov models License: GPL-2
mafft - Multiple sequence alignments using a variety of algorithms License: free-noncomm
mrbayes - Bayesian Inference of Phylogeny License: GPL-2
muscle - Multiple sequence comparison by log-expectation License: public-domain
ncbi-tools - Development toolkit and applications for computational biology License: public-domain
njplot - A phylogenetic tree drawing program which supports tree rooting License: public-domain
paml - Phylogenetic Analysis by Maximum Likelihood License: free-noncomm
phylip - PHYLIP - The PHYLogeny Inference Package License: freedist
phyml - A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. License: GPL-2
poa - Fast multiple sequence alignments using partial-order graphs License: GPL-2
primer3 - Design primers for PCR reactions. License: whitehead
prints - A protein motif fingerprint database License: public-domain
probcons - Probabilistic Consistency-based Multiple Alignment of Amino Acid Sequences License: public-domain
prosite - A protein families and domains database License: swiss-prot
qrna - Prototype ncRNA genefinder License: GPL-2
readseq - Reads and writes nucleic/protein sequences in various formats. License: public-domain
rebase - A restriction enzyme database License: public-domain
rnaview - Generates 2D displays of RNA/DNA secondary structures with tertiary interactions License: public-domain
seaview - A graphical multiple sequence alignment editor License: public-domain
sim4 - A program to align cDNA and genomic DNA License: GPL-2
staden-bin - The Staden Package - Biological sequence handling and analysis License: staden
stride - A program for protein secondary structure assignment from atomic coordinates. License: as-is
t-coffee - A multiple sequence alignment package License: t-coffee
transfac - A database of eucaryotic transcription factors License: public-domain
tree-puzzle - Maximum likelihood analysis for nucleotide, amino acid, and two-state data. License: GPL-2
treeviewx - A phylogenetic tree viewer License: GPL-2
trnascan-se - tRNA detection in large-scale genome sequences License: GPL-2
vienna-rna - Vienna RNA Package - RNA secondary structure prediction and comparison License: vienna-rna
wise - Intelligent algorithms for DNA searches License: BSD
calculators
abakus - Abakus is a simple calculator for kde, similar to bc with a nice gui. License: GPL-2
calcoo - scientific calculator designed to provide maximum usability License: GPL-2
calculator - Scientific calculator based on the FOX Toolkit License: GPL-2
fung-calc - Scientific Graphing Calculator License: GPL-2
galculator - A GTK2 based algebraic and RPN calculator License: GPL-2
gonvert - Unit conversion utility written in PyGTK License: GPL-2
hcalc - DJ's Hex Calculator License: GPL-2
hexcalc - A simple hex calculator for X License: GPL-2
kconvert - KDE tool to convert between different units License: GPL-2
kunit - An excellent qt-based unit conversion tool License: GPL-2
orpie - A fullscreen RPN calculator for the console License: GPL-2
pcalc - the programmers calculator License: GPL-2
pgcalc2 - PG Calculator is a powerful scientific calculator. License: GPL-2
qalculate-bases - A GTK+ base conversion tool License: GPL-2
qalculate-currency - A GTK+ currency converter License: GPL-2
qalculate-gtk - A modern multi-purpose calculator for GNOME License: GPL-2
qalculate-kde - A modern multi-purpose calculator for KDE License: GPL-2
qalculate-units - A GTK+ unit conversion tool License: GPL-2
rpc - A fullscreen console-based RPN calculator that uses the curses library License: GPL-2
tilp - TiLP - A linking program for Texas Instruments' graphing calculators License: GPL-2
transcalc - A microwave and RF transmission line calculator License: GPL-2
units - program for units conversion and units calculation License: GPL-2
wcalc - A flexible command-line scientific calculator License: GPL-2
chemistry
apbs - Software for evaluating the electrostatic properties of nanoscale biomolecular systems License: GPL-2
babel - Babel is a program to interconvert file formats used in molecular modeling. License: as-is
bodr - The Blue Obelisk Data Repository listing element and isotope properties. License: MIT
caver - Rapid, accurate and fully automated calculation of pathways leading from buried cavities to outside solvent in static and dynamic protein structures License: CAVER
ccp4 - Protein X-ray crystallography toolkit License: ccp4
chemtool - program for drawing organic molecules License: GPL-2
cns - Crystallography and NMR System License: cns
coot - Crystallographic Object-Oriented Toolkit for model building, completion and validation License: GPL-2
easychem - Chemical structure drawing program - focused on presentation. License: GPL-2
eden - A crystallographic real-space electron-density refinement and optimization program License: GPL-2
elem - periodic table of the elements License: GPL-2
gamess - A powerful quantum chemistry package License: gamess
ghemical - Chemical quantum mechanics and molecular mechanics License: GPL-2
gopenmol - gOpenMol is a tool for the visualization and analysis of molecular structures License: as-is
gperiodic - Periodic table application for Linux License: GPL-2
gromacs - The ultimate molecular dynamics simulation package License: GPL-2
gtk-gamess - GTK-GAMESS is a graphical frontend for GAMESS, a General Atomic and Molecular Electronic Structure System License: GPL-2
kemistry - Kemistry--a set of chemistry related tools for KDE. License: GPL-2
maid - Automates the fitting of protein X-ray crystallographic electron density maps License: as-is
maxit - An application for processing and curation of macromolecular structure data License: PDB
mead - Macroscopic Electrostatics with Atomic Detail License: GPL-2
molden - Display molecular density from GAMESS-UK, GAMESS-US, GAUSSIAN and Mopac/Ampac. License: as-is
moldy - Program for performing molecular dynamics simulations. License: GPL-2
molmol - Publication-quality molecular visualization package License: molmol
molscript - Display molecular 3D structures, such as proteins, in both schematic and detailed representations. License: molscript glut molscript
mopac7 - Autotooled, updated version of a powerful, fast semi-empirical package License: mopac7
mpqc - The Massively Parallel Quantum Chemistry Program License: GPL-2
mustang - MUltiple STructural AligNment AlGorithm. License: BSD
namd - A powerful and highly parallelized molecular dynamics code License: namd
nmrpipe - Spectral visualisation, analysis and Fourier processing License: as-is
nmrview - Visualisation and analysis of processed NMR data License: as-is
openbabel - Open Babel interconverts file formats used in molecular modeling. License: GPL-2
ortep3 - Thermal ellipsoid plot program for crystal structure illustrations License: public-domain
pdb2pqr - pdb2pqr is an automated pipeline for the setup, execution, and analysis of Poisson-Boltzmann electrostatics calculations License: GPL-2
pdb-extract - Tools for extracting mmCIF data from structure determination applications License: PDB
platon - Versatile, SHELX-97 compatible, multipurpose crystallographic tool License: free-noncomm
povscript+ - Modified molscript that uses POV-Ray, does thermal ellipsoids, and more License: molscript glut molscript
probe - Evaluates atomic packing within or between molecules License: richardson
psi - Suite of ab initio quantum chemistry programs to compute various molecular properties License: GPL-2
pymol - A Python-extensible molecular graphics system. License: PSF-2.2
pynmr - An NMR Extension for PyMOL, written in Python License: GPL-2
rasmol - Free program that displays molecular structure. License: as-is
raster3d - a set of tools for generating high quality raster images of proteins or other molecules License: as-is
reduce - Adds hydrogens to a Protein Data Bank (PDB) molecule structure file License: richardson
shelx - Programs for crystal structure determination from single-crystal diffraction data License: free-noncomm
sparky - Graphical NMR assignment and integration program for proteins, nucleic acids, and other polymers License: sparky
tinker - TINKER is a molecular modeling package that includes force fields for handing large molecules and large systems, such as AMBER and CHARMM. A Java based visualization front end is included. License: Tinker
validation - Set of tools used by the Protein Data Base (PDB) for processing and checking structure data License: PDB
viewmol - Open-source graphical front end for computational chemistry programs License: GPL-2
vmd - Visual Molecular Dynamics License: vmd
webmo - Web-based interface to computational chemistry packages License: WebMO
xdrawchem - Molecular structure drawing program License: GPL-2
electronics
alliance - Digital IC design tools (simulation, synthesis, place/route, etc...). License: LGPL-2 GPL-2 LGPL-2
balsa - The Balsa asynchronous synthesis system License: GPL-2
chipmunksystem - Chipmunk System - circuit schematic and simulation environment License: GPL-1
eagle - EAGLE Layout Editor License: cadsoft
electric - Electric is a sophisticated electrical CAD system that can handle many forms of circuit design License: GPL-2
espresso-ab - POSIX compliant version of the espresso logic minimization tool License: BSD
freehdl - A free VHDL simulator. License: GPL-2
geda - geda is a core metapackage which compiles all the necessary components you would need for a minimal gEDA/gaf system License: GPL-2
geda-suite - geda-suite is a metapackage which compiles all the necessary components you would expect for a full-featured gEDA/gaf system License: GPL-2
gerbv - gerbv - The gEDA Gerber Viewer License: GPL-2
gnetman - gnetman - A GNU Netlist Manipulation Library License: GPL-2
gnucap - GNUCap is the GNU Circuit Analysis Package License: GPL-2
gplcver - Verilog simulator License: GPL-2
gspeakers - GTK based loudspeaker enclosure and crossovernetwork designer License: LGPL-2.1
gtkwave - A wave viewer for LXT, LXT2, VZT, GHW and standard Verilog VCD/EVCD files License: MIT GPL-2 MIT
gwave - A waveform viewer analog data, such as SPICE simulations. License: GPL-2
iverilog - A Verilog simulation and synthesis tool License: GPL-2
kicad - Electronic schematic and PCB design tools. License: GPL-2
klogic - KLogic is an application for easy creation and simulation of electrical circuits License: GPL-2
ktechlab - KTechlab is a development and simulation environment for microcontrollers and electronic circuits License: GPL-2
lard - Language for Asynchronous Research and Development. Used to describe and simulate asynchronous circuits License: GPL-2
magic - The VLSI design CAD tool. License: GPL-2 as-is GPL-2
modelsim - VHDL and mixed-VHDL/Verilog simulator License: modelsim
ng-spice-rework - The Next Generation Spice (Electronic Circuit Simulator) from CVS HEAD. License: GPL-2 BSD GPL-2
oregano - Oregano is an application for schematic capture and simulation of electrical circuits. License: GPL-2
pcb - tool for the layout of printed circuit boards License: GPL-2
petrify - Synthesize Petri nets into asynchronous circuits License: petrify
qucs - Quite Universal Circuit Simulator is a Qt based circuit simulator License: GPL-2
spice - general-purpose circuit simulation program License: BSD
splat - SPLAT! is an RF Signal Propagation, Loss, And Terrain analysis tool for the spectrum between 20 MHz and 20 GHz. License: GPL-2
systemc - A C++ based modeling platform for VLSI and system-level co-design License: SOPLA-2.4
vbs - vbs - the Verilog Behavioral Simulator License: GPL-2
vstgl - Visual Signal Transition Graph Lab License: GPL-2
xcircuit - Circuit drawing and schematic capture program. License: GPL-2
geosciences
gempak - GEMPAK Meteorological Plotting and Analysis Package License: as-is
gmt - Powerful map generator License: GPL-2
gpsbabel - GPSBabel is a waypoints, tracks and routes converter in variety of form License: GPL-2
gpsd - GPS daemon and library to support USB/serial GPS devices and various GPS/mapping clients. License: BSD
grass - An open-source GIS with raster and vector functionality License: GPL-2
LatLongUTMconversion - A lat/lon-UTM conversion utility (used by pygps) License: GPL-2
mapserver - OpenSource development environment for constructing spatially enabled Internet-web applications. License: MIT
marble - Free 3D desk globe and world atlas License: GPL-2
vis5d+ - 3dimensional weather modeling software License: GPL-2
libs
acml - AMD Core Math Library (ACML) for x86 and amd64 CPUs License: ACML
amd - Library to order a sparse matrix prior to Cholesky factorization License: LGPL-2
arpack - Arnoldi package library to solve large scale eigenvalue problems. License: BSD
beagle - Open BEAGLE, a versatile EC/GA/GP framework License: GPL-2
blas-atlas - Automatically Tuned Linear Algebra Software BLAS implementation License: BSD
blas-config - Utility to change the default BLAS library License: GPL-2
blas-goto - The fastest implementations of the Basic Linear Algebra Subroutines License: tacc
blas-reference - FORTRAN reference implementation of the BLAS (linear algebra lib) License: public-domain
buddy - BuDDY - A Binary Decision Diagram Package License: as-is
cblas-reference - C interface to the BLAS License: public-domain
cdf - CDF library and toolkit for storing, manipulating, and accessing multi-dimensional data sets License: CDF
cfitsio - C and Fortran library for manipulating FITS files License: GPL-2
cifparse-obj - Provides an object-oriented application interface to information in mmCIF format License: PDB
cln - CLN, a class library (C++) for numbers License: GPL-2
coot-data - Data for the Crystallographic Object-Oriented Toolkit License: GPL-2
djbfft - extremely fast library for floating-point convolution License: as-is
fftw - C subroutine library for computing the Discrete Fourier Transform (DFT) License: GPL-2
galib - library for using genetic algorithms in C++ programs License: GAlib
gaul-devel - Genetic Algorithm Utility Library License: GPL-2
gdal - GDAL is a translator library for raster geospatial data formats (includes OGR support) License: MIT
geos - Geometry Engine - Open Source License: GPL-2
gerris - The Gerris Flow Solver License: GPL-2
gsl - The GNU Scientific Library License: GPL-2
gts - GNU Triangulated Surface Library License: LGPL-2
hdf - HDF4 is a general purpose library and file format for storing scientific data. License: NCSA-HDF
hdf5 - General purpose library and file format for storing scientific data License: NCSA-HDF
io_lib - A general purpose trace and experiment file reading/writing interface License: staden
itpp - IT++ is a C++ library of mathematical, signal processing, speech processing, and communications classes and functions License: GPL-2
lapack-atlas - Full LAPACK implementation using available ATLAS routines License: BSD
lapack-config - Utility to change the default LAPACK library License: GPL-2
lapack-reference - FORTRAN reference implementation of LAPACK Linear Algebra PACKage License: BSD
libcore - The main goal of the CORE project is to address the issues of robust numerical and geometric computation. License: QPL-1.0
libctl - Guile-based library implementing flexible control files for scientific simulations License: GPL-2
libecwj2 - This library offers read (decompress) and write (compress) for both the ECW and the ISO JPEG 2000 image file formats License: ECWPL
libgdgeda - libgdgeda - a PNG creation library for gEDA License: GPL-2
libgeda - libgeda - this library provides functions needed for the gEDA core suite License: GPL-2
libgeotiff - Library for reading TIFF files with embedded tags for geographic (cartographic) information License: GPL-2
libghemical - Chemical quantum mechanics and molecular mechanics License: GPL-2
libint - Used to evaluate traditional and novel two-body matrix elements (integrals) over Cartesian Gaussian functions License: GPL-2
libnova - Celestial Mechanics and Astronomical Calculation Library License: LGPL-2
liborigin - A library for reading OriginLab OPJ project files License: GPL-2
libqalculate - A modern multi-purpose calculator library License: GPL-2
libscigraphica - Libraries for data analysis and technical graphics License: GPL-2
libsvm - Library for Support Vector Machines License: BSD
libticables - Link cables support for the TiLP calculator linking program License: GPL-2
libticalcs - Calculator API for the TiLP calculator linking program License: GPL-2
libtifiles - Various TI file formats support for the TiLP calculator linking program License: GPL-2
mccp4 - Mini-CCP4 library including mtz and map I/O License: ccp4
minuit - A C++ physics analysis tool for function minimization License: GPL-2
mkl - Intel(R) Math Kernel Library License: imkl-5.1
mmtk - Molecular Modeling ToolKit for Python License: as-is
netcdf - Scientific library and interface for array oriented data access License: UCAR-Unidata
ogdi - OGDI - Open Geographical Datastore Interface, a GIS support library License: GPL-2
pgplot - A C/FORTRAN device-independent graphics library for making simple scientific graphs License: free-noncomm
plplot - A Scientific Plotting Library License: LGPL-2
primegen - A small, fast library to generate primes in order License: as-is
proj - Proj.4 cartographic projection software with updated NAD27 grids License: MIT
pymmlib - Software toolkit and library of routines for the analysis and manipulation of macromolecular structural models License: Artistic
qfits - ESO stand-alone C library offering easy access to FITS files. License: GPL-2
rcsb-data - Data required to run RCSB PDB applications License: PDB
scipy - Scientific algorithms library for Python License: BSD
shapelib - library for manipulating ESRI Shapefiles License: GPL-2
szip - Szip is an implementation of the extended-Rice lossless compression algorithm License: szip
torch - machine-learning library, written in simple C++ License: BSD
udunits - The UCAR/Unidata Units library License: UCAR-Unidata
ufconfig - Common configuration scripts for the SuiteSparse libraries License: LGPL-2
umfpack - Unsymmetric multifrontal sparse LU factorization library License: LGPL-2
vtk - The Visualization Toolkit License: BSD
mathematics
agda - Agda is a proof assistant in Haskell. License: MIT
axiom - Axiom is a general purpose Computer Algebra system License: GPL-2
calc - An arbitrary precision C-like arithmetic system License: LGPL-2
coq - Coq is a proof assistant written in O'Caml License: LGPL-2.1
drgeo - Interactive geometry package License: GPL-2
euler - Mathematical programming environment License: GPL-2
fann - Fast Artificial Neural Network Library implements multilayer artificial neural networks in C License: LGPL-2.1
geomview - Interactive Geometry Viewer License: LGPL-2.1
gimps - GIMPS - The Great Internet Mersenne Prime Search License: as-is
ginac - GiNaC : a free CAS (computer algebra system) License: GPL-2
glpk - GNU Linear Programming Kit License: GPL-2
gturing - GNOME turing machine simulator License: GPL-2
kalamaris - The KDE Computer Algebra System License: GPL-2
koctave - A KDE GUI for Octave numerical computing system License: GPL-2
kseg - Interactive geometry program for exploring Euclidean geometry License: GPL-2
ksimus - KSimus is a KDE tool for simulation, automatization and visualization of technical processes. License: GPL-2
ksimus-boolean - The package Boolean contains some boolean components for KSimus. License: GPL-2
ksimus-datarecorder - The package Data Recorder contains some components which record data for KSimus. License: GPL-2
ksimus-floatingpoint - The package Floating Point contains some floating point related components for KSimus. License: GPL-2
Macaulay2 - research tool for commutative algebra and algebraic geometry License: GPL-2
mathomatic - Automatic algebraic manipulator License: LGPL-2
maxima - Free computer algebra environment, based on Macsyma License: AECA GPL-2 AECA
mupad - MuPAD is an open computer algebra system License: mupad
num-utils - A set of programs for dealing with numbers from the command line License: GPL-2
nusmv - NuSMV: new symbolic model checker License: LGPL-2.1
octave - GNU Octave is a high-level language (MatLab compatible) intended for numerical computations License: GPL-2
octave-forge - A collection of custom scripts, functions and extensions for GNU Octave License: as-is
otter - An Automated Deduction System. License: otter
pari - pari (or pari-gp) : a software package for computer-aided number theory License: GPL-2
pariguide - PariGUIde, a GUI for the math. program Pari-GP License: GPL-2
pspp - Program for statistical analysis of sampled data. License: GPL-2
scilab - Scientific software package for numerical computations (Matlab lookalike) License: scilab
singular - Computer algebra system for polynomial computations License: singular
snns - Stuttgart Neural Network Simulator License: SNNS-4.2
wxmaxima - Graphical frontend to Maxima, using the wxWidgets toolkit. License: GPL-2
yacas - very powerful general purpose computer algebra system License: GPL-2
misc
boinc - The Berkeley Open Infrastructure for Network Computing License: LGPL-2.1
gato - Graph Animation Toolbox License: LGPL-2
gri - language for scientific graphics programming License: GPL-2
gt-itm - A collection of routines to generate and analyze graphs using a wide variety of models for internetwork topology License: BSD as-is BSD
h5utils - utilities for visualization and conversion of scientific data in the HDF5 format License: GPL-2
kboincspy - KDE monitoring utility for the BOINC distributed client License: GPL-2
nco - Command line utilities for operating on netCDF files License: GPL-2
ncview - X-based viewer for netCDF files License: GPL-2
netlogo-bin - NetLogo cross-platform multi-agent programmable modeling environment License: netlogo
oww - A one-wire weather station for Dallas Semiconductor License: Artistic
qcad - A 2D CAD package based upon Qt. License: GPL-2
qcad-parts - Collection of CAD files that can be used from the library browser of QCad License: GPL-2
tinysvm - TinySVM is an implementation of Support Vector Machines (SVMs) for pattern recognition. License: LGPL-2.1
physics
abinit - Find total energy, charge density and electronic structure using density functional theory License: GPL-2
camfr - Full vectorial Maxwell solver based on eigenmode expansion License: GPL-2
jaxodraw - Java program for drawing Feynman diagrams License: GPL-2
lightspeed - Light Speed! is an OpenGL-based program developed to illustrate the effects of special relativity on the appearance of moving objects. License: LGPL-2.1
mpb - Program for computing the band structures and electromagnetic modes of periodic dielectric structures License: GPL-2
root - An Object-Oriented Data Analysis Framework License: as-is
xfoil - Design and analysis of subsonic isolated airfoils License: GPL-2
visualization
epix - 2- and 3-D plotter for creating images (to be used in LaTeX) License: GPL-2
fig2sxd - A utility to convert files in xfig format to OpenOffice.org Draw format License: GPL-2
g3data - Tool for extracting data from graphs License: GPL-2
gfsview - GfsView is a graphical viewer for Gerris simulation files. License: GPL-2
gnuplot - Command-line driven interactive plotting program License: gnuplot
grace - WYSIWYG 2D plotting tool for the X Window System License: GPL-2
gwyddion - A software framework for SPM data analysis License: GPL-2
hippodraw - Highly interactive data analysis Qt environment for C++ and python License: LGPL-2
kpl - KDE tool for plotting data sets and functions in 2D and 3D. License: GPL-2
labplot - LabPlot is a KDE application for data plotting and function analysis. License: GPL-2
opendx - A 3D data visualization tool License: IPL-1
opendx-samples - Samples for IBM Data Explorer License: IPL-1
paraview - ParaView is a powerful scientific data visualization application License: BSD
pyxplot - Graphing program similar to gnuplot to produce publication-quality figures License: GPL-2
qmatplot - gnuplot-like tool for plotting data sets in either two or three dimensions License: GPL-2
qtiplot - Qt based clone of the Origin plotting package License: GPL-2
quickplot - A fast interactive 2D plotter. License: GPL-2
scigraphica - Scientific application for data analysis and technical graphics License: GPL-2
spectromatic - Little program that generates spectrograms (time-frequency analysis images) from mono or stereo wave files. License: GPL-2
veusz - Qt based scientific plotting package with good Postscript output. License: GPL-2